• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
EFN91880.1 protein (Prevotella amnii) - STRING interaction network
"EFN91880.1" - Arylsulfatase in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFN91880.1Arylsulfatase; Identified by match to protein family HMM PF00884 (503 aa)    
Predicted Functional Partners:
EFN91926.1
annotation not available (48 aa)
              0.552
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] (159 aa)
              0.516
EFN91943.1
annotation not available (170 aa)
              0.516
EFN90582.1
Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535; match to protein family HMM PF00704; match to protein family HMM PF01522 (1112 aa)
   
      0.423
EFN91951.1
Peptidase dimerization domain protein; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687 (453 aa)
   
        0.418
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (8%) [HD]