STRINGSTRING
HMPREF9018_0209 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0209" - Uncharacterized protein in Prevotella amnii
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
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[Homology]
Score
HMPREF9018_0209Uncharacterized protein (170 aa)    
Predicted Functional Partners:
smpB
Small protein B ; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to tra [...] (159 aa)
              0.866
HMPREF9018_1072
PAP2 family protein (324 aa)
   
          0.774
HMPREF9018_0575
Uncharacterized protein (108 aa)
   
          0.765
HMPREF9018_0984
Uncharacterized protein (283 aa)
   
          0.763
HMPREF9018_0786
Uncharacterized protein (220 aa)
   
          0.760
HMPREF9018_1842
Uncharacterized protein (204 aa)
   
          0.756
HMPREF9018_0259
Peptidylprolyl isomerase (715 aa)
   
          0.751
HMPREF9018_0576
Fibronectin type III domain protein (860 aa)
   
          0.736
HMPREF9018_0601
Uncharacterized protein (222 aa)
   
          0.735
HMPREF9018_0100
Uncharacterized protein (363 aa)
   
          0.733
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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