STRINGSTRING
HMPREF9018_0223 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0223" - SNARE-like domain protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0223SNARE-like domain protein (151 aa)    
Predicted Functional Partners:
HMPREF9018_0221
Phosphoribosylglycinamide synthetase (422 aa)
              0.867
HMPREF9018_0222
Uncharacterized protein (309 aa)
              0.859
HMPREF9018_0220
Peptidase, S9A/B/C family, catalytic domain protein (738 aa)
              0.720
HMPREF9018_0219
THUMP domain protein (484 aa)
              0.710
HMPREF9018_0218
Putative serine O-acetyltransferase (314 aa)
              0.709
HMPREF9018_0224
Oxidoreductase NAD-binding domain protein (256 aa)
              0.516
pyrD
Dihydroorotate dehydrogenase ; Catalyzes the conversion of dihydroorotate to orotate (302 aa)
              0.462
HMPREF9018_0217
Low molecular weight phosphotyrosine protein phosphatase (164 aa)
              0.457
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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