STRINGSTRING
HMPREF9018_0235 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0235" - Transcriptional regulator, TetR family in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0235Transcriptional regulator, TetR family (214 aa)    
Predicted Functional Partners:
HMPREF9018_0236
Uncharacterized protein (413 aa)
 
          0.770
HMPREF9018_1671
ABC transporter, ATP-binding protein (584 aa)
 
          0.682
HMPREF9018_0237
TonB-dependent receptor plug domain protein (795 aa)
 
          0.674
HMPREF9018_1670
ABC transporter, ATP-binding protein (579 aa)
 
          0.665
HMPREF9018_1463
Uncharacterized protein (99 aa)
   
          0.571
HMPREF9018_1286
Toxin-antitoxin system, toxin component, RelE family (113 aa)
   
          0.507
HMPREF9018_1287
DNA-binding helix-turn-helix protein (101 aa)
   
          0.466
HMPREF9018_0234
Uncharacterized protein (52 aa)
              0.466
HMPREF9018_0230
Putative septum site-determining protein MinC (498 aa)
 
          0.462
HMPREF9018_1533
Uncharacterized protein (139 aa)
   
          0.446
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (6%) [HD]