STRINGSTRING
HMPREF9018_0239 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0239" - Uncharacterized protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0239Uncharacterized protein (138 aa)    
Predicted Functional Partners:
HMPREF9018_0470
Conjugative transposon protein TraA (267 aa)
   
          0.765
HMPREF9018_0469
Uncharacterized protein (175 aa)
   
          0.717
HMPREF9018_1164
Uncharacterized protein (467 aa)
   
          0.635
HMPREF9018_0340
Uncharacterized protein (469 aa)
   
          0.625
HMPREF9018_0856
Uncharacterized protein (341 aa)
   
          0.586
HMPREF9018_0632
Uncharacterized protein (168 aa)
   
          0.586
HMPREF9018_1755
Uncharacterized protein (364 aa)
   
          0.585
HMPREF9018_1802
N-6 DNA Methylase (1534 aa)
   
          0.573
HMPREF9018_1774
Conjugative transposon TraN protein (316 aa)
   
          0.559
HMPREF9018_0238
DNA binding domain, excisionase family (103 aa)
 
          0.553
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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