STRINGSTRING
HMPREF9018_0260 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0260" - Uncharacterized protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0260Uncharacterized protein (421 aa)    
Predicted Functional Partners:
HMPREF9018_0262
Outer membrane protein transport protein, Ompp1/FadL/TodX family (435 aa)
 
          0.887
HMPREF9018_0261
Uncharacterized protein (219 aa)
 
          0.864
guaA
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (514 aa)
   
 
    0.747
HMPREF9018_0259
Peptidylprolyl isomerase (715 aa)
              0.740
guaB
Inosine-5’-monophosphate dehydrogenase (494 aa)
   
 
    0.707
HMPREF9018_1622
Oxidoreductase, short chain dehydrogenase/reductase family protein (246 aa)
   
 
    0.699
fabG
3-oxoacyl-[acyl-carrier-protein] reductase (250 aa)
   
 
    0.699
rpmA
50S ribosomal protein L27 (96 aa)
   
      0.644
HMPREF9018_0263
Uncharacterized protein (409 aa)
              0.594
HMPREF9018_0667
Uncharacterized protein (179 aa)
   
          0.547
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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