STRINGSTRING
yfiO protein (Prevotella amnii) - STRING interaction network
"yfiO" - Outer membrane assembly lipoprotein YfiO in Prevotella amnii
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfiOOuter membrane assembly lipoprotein YfiO (309 aa)    
Predicted Functional Partners:
HMPREF9018_0283
Uncharacterized protein (113 aa)
 
          0.953
HMPREF9018_0287
Uncharacterized protein (840 aa)
 
          0.859
HMPREF9018_0282
Uncharacterized protein (150 aa)
 
          0.842
luxS
S-ribosylhomocysteine lyase ; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD) (159 aa)
              0.830
mtnN
5’-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 ; Catalyzes the irreversible cleavage of the glycosidic bond in both 5’-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5’-methylthioribose and S-ribosylhomocysteine, respectively (231 aa)
              0.787
HMPREF9018_0258
Uncharacterized protein (1110 aa)
   
          0.778
HMPREF9018_0693
Uncharacterized protein (264 aa)
   
          0.768
HMPREF9018_1108
WbqC-like protein (204 aa)
   
          0.754
HMPREF9018_0259
Peptidylprolyl isomerase (715 aa)
   
          0.754
HMPREF9018_2058
LysM domain protein (458 aa)
   
          0.740
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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