STRINGSTRING
HMPREF9018_0296 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0296" - TonB-dependent receptor in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0296TonB-dependent receptor (294 aa)    
Predicted Functional Partners:
HMPREF9018_0295
Uncharacterized protein (229 aa)
 
          0.955
HMPREF9018_0294
Uncharacterized protein (200 aa)
 
          0.935
HMPREF9018_0290
Tetratricopeptide repeat protein (470 aa)
 
          0.855
HMPREF9018_0291
Uncharacterized protein (320 aa)
 
          0.812
HMPREF9018_0293
Transporter, MotA/TolQ/ExbB proton channel family protein (279 aa)
 
          0.787
HMPREF9018_0486
Uncharacterized protein (616 aa)
   
          0.775
HMPREF9018_0892
Tetratricopeptide repeat domain protein (417 aa)
   
          0.772
HMPREF9018_0893
Tetratricopeptide repeat protein (368 aa)
   
          0.760
HMPREF9018_0279
Uncharacterized protein (1706 aa)
   
          0.744
HMPREF9018_0081
Uncharacterized protein (288 aa)
   
          0.705
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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