STRINGSTRING
psd protein (Prevotella amnii) - STRING interaction network
"psd" - Phosphatidylserine decarboxylase in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psdPhosphatidylserine decarboxylase (235 aa)    
Predicted Functional Partners:
HMPREF9018_0306
Putative CDP-diacylglycerol-serine O-phosphatidyltransferase (236 aa)
 
 
  0.999
HMPREF9018_0305
Uncharacterized protein (89 aa)
              0.829
HMPREF9018_1640
Cardiolipin synthase ; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol (473 aa)
   
  0.790
HMPREF9018_0969
Phospholipase D domain protein (431 aa)
   
  0.790
HMPREF9018_1601
AMP-binding enzyme (433 aa)
   
 
    0.755
HMPREF9018_1603
Acyltransferase (1194 aa)
   
 
  0.744
HMPREF9018_0690
Acyltransferase (255 aa)
   
 
  0.744
HMPREF9018_0577
Acyltransferase (181 aa)
   
 
  0.744
HMPREF9018_0848
Uncharacterized protein (333 aa)
   
 
    0.720
HMPREF9018_1849
Transporter, major facilitator family protein (442 aa)
     
 
    0.708
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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