STRINGSTRING
HMPREF9018_0328 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0328" - Uncharacterized protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0328Uncharacterized protein (116 aa)    
Predicted Functional Partners:
HMPREF9018_0327
Uncharacterized protein (98 aa)
 
          0.936
HMPREF9018_0329
Uncharacterized protein (100 aa)
 
          0.795
HMPREF9018_0231
Uncharacterized protein (72 aa)
   
          0.618
HMPREF9018_0326
Sporulation and cell division repeat protein (159 aa)
              0.602
HMPREF9018_0704
Uncharacterized protein (378 aa)
   
          0.599
HMPREF9018_0325
Putative pre-16S rRNA nuclease ; Could be a nuclease involved in processing of the 5’-end of pre-16S rRNA (139 aa)
              0.598
HMPREF9018_0997
Uncharacterized protein (96 aa)
   
          0.592
HMPREF9018_0100
Uncharacterized protein (363 aa)
   
          0.592
HMPREF9018_2014
Uncharacterized protein (144 aa)
   
          0.589
HMPREF9018_1373
Uncharacterized protein (297 aa)
   
          0.576
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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