STRINGSTRING
HMPREF9018_0380 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0380" - SusD family protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0380SusD family protein (534 aa)    
Predicted Functional Partners:
HMPREF9018_0381
TonB-linked outer membrane protein, SusC/RagA family (999 aa)
 
     
  0.930
HMPREF9018_0378
Peptidase, S8/S53 family (951 aa)
 
          0.923
HMPREF9018_0377
Uncharacterized protein (315 aa)
 
          0.915
HMPREF9018_0966
TonB-dependent receptor (780 aa)
   
          0.730
HMPREF9018_0379
Uncharacterized protein (575 aa)
              0.684
HMPREF9018_1894
Uncharacterized protein (354 aa)
   
          0.650
HMPREF9018_0532
Uncharacterized protein (579 aa)
   
          0.621
HMPREF9018_2047
Uncharacterized protein (178 aa)
   
          0.596
HMPREF9018_1164
Uncharacterized protein (467 aa)
   
          0.578
HMPREF9018_1840
Uncharacterized protein (265 aa)
   
          0.539
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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