STRINGSTRING
HMPREF9018_0384 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0384" - MATE efflux family protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0384MATE efflux family protein (477 aa)    
Predicted Functional Partners:
HMPREF9018_0720
MATE efflux family protein (454 aa)
   
          0.621
HMPREF9018_0989
PhoH family protein (321 aa)
     
      0.589
HMPREF9018_1603
Acyltransferase (1194 aa)
     
    0.559
HMPREF9018_0690
Acyltransferase (255 aa)
     
    0.559
HMPREF9018_0577
Acyltransferase (181 aa)
     
    0.559
HMPREF9018_0912
Single-stranded DNA-binding protein (137 aa)
       
    0.486
HMPREF9018_0385
Peptidyl-prolyl cis-trans isomerase (210 aa)
   
        0.483
HMPREF9018_1669
Uncharacterized protein (790 aa)
       
    0.479
rbfA
Ribosome-binding factor A ; Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5’-terminal helix region of 16S rRNA (113 aa)
   
        0.403
HMPREF9018_1139
DHHA1 domain protein (346 aa)
   
        0.403
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (6%) [HD]