STRINGSTRING
HMPREF9018_0393 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0393" - Peptidase Do in Prevotella amnii
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0393Peptidase Do (489 aa)    
Predicted Functional Partners:
HMPREF9018_1037
Uncharacterized protein (394 aa)
     
  0.768
HMPREF9018_1744
Peptidyl-prolyl cis-trans isomerase (201 aa)
   
 
  0.757
HMPREF9018_0119
Uracil phosphoribosyltransferase (219 aa)
   
    0.743
HMPREF9018_1671
ABC transporter, ATP-binding protein (584 aa)
   
 
  0.736
HMPREF9018_1670
ABC transporter, ATP-binding protein (579 aa)
   
 
  0.736
HMPREF9018_1102
ABC transporter, ATP-binding protein (637 aa)
   
 
  0.736
HMPREF9018_1692
ABC transporter, ATP-binding protein (558 aa)
   
 
  0.721
HMPREF9018_1887
Pyridoxal-dependent decarboxylase, pyridoxal binding domain protein (400 aa)
   
 
    0.708
nspC
Carboxynorspermidine decarboxylase (394 aa)
   
 
    0.708
HMPREF9018_0354
OmpA family protein (230 aa)
   
 
  0.698
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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