STRINGSTRING
HMPREF9018_0429 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0429" - VRR-NUC domain protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0429VRR-NUC domain protein (136 aa)    
Predicted Functional Partners:
HMPREF9018_0428
Uncharacterized protein (242 aa)
              0.859
HMPREF9018_0427
Uncharacterized protein (151 aa)
              0.734
HMPREF9018_0426
DNA-binding protein HU (89 aa)
              0.710
HMPREF9018_0430
Uncharacterized protein (184 aa)
              0.681
HMPREF9018_0431
Uncharacterized protein (204 aa)
 
          0.651
HMPREF9018_0425
Helicase C-terminal domain protein (477 aa)
 
          0.618
HMPREF9018_1808
Uncharacterized protein (486 aa)
   
          0.465
HMPREF9018_0424
Uncharacterized protein (197 aa)
              0.438
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (7%) [HD]