STRINGSTRING
HMPREF9018_0459 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0459" - Conjugative transposon protein TraQ in Prevotella amnii
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0459Conjugative transposon protein TraQ (156 aa)    
Predicted Functional Partners:
HMPREF9018_0461
Conjugative transposon TraN protein (316 aa)
 
          0.974
HMPREF9018_0460
Conjugative transposon protein TraO (192 aa)
 
          0.963
HMPREF9018_0458
Phage lysozyme (169 aa)
 
          0.931
HMPREF9018_0462
Conjugative transposon TraM protein (421 aa)
 
          0.894
HMPREF9018_1774
Conjugative transposon TraN protein (316 aa)
 
          0.855
HMPREF9018_0463
Conjugative transposon TraK protein (207 aa)
 
          0.854
HMPREF9018_0465
Conjugative transposon protein TraI (204 aa)
 
          0.823
HMPREF9018_0464
Conjugative transposon TraJ protein (345 aa)
 
          0.822
HMPREF9018_1773
Conjugative transposon protein TraO (197 aa)
 
          0.793
HMPREF9018_1776
Conjugative transposon TraK protein (207 aa)
 
          0.759
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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