STRINGSTRING
HMPREF9018_0470 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0470" - Conjugative transposon protein TraA in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0470Conjugative transposon protein TraA (267 aa)    
Predicted Functional Partners:
HMPREF9018_0469
Uncharacterized protein (175 aa)
 
          0.967
HMPREF9018_0471
Uncharacterized protein (126 aa)
   
          0.775
HMPREF9018_1786
Relaxase/mobilization nuclease domain protein (424 aa)
   
          0.773
HMPREF9018_0472
Relaxase/mobilization nuclease domain protein (426 aa)
   
          0.772
HMPREF9018_0239
Uncharacterized protein (138 aa)
   
          0.765
HMPREF9018_1778
Conjugative transposon protein TraI (209 aa)
   
          0.755
HMPREF9018_1777
Conjugative transposon TraJ protein (345 aa)
   
          0.737
HMPREF9018_0631
Uncharacterized protein (139 aa)
   
          0.734
HMPREF9018_1796
Uncharacterized protein (139 aa)
   
          0.733
HMPREF9018_0465
Conjugative transposon protein TraI (204 aa)
   
          0.731
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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