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HMPREF9018_0529 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0529" - ABC transporter, ATP-binding protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0529ABC transporter, ATP-binding protein (729 aa)    
Predicted Functional Partners:
HMPREF9018_0528
Uncharacterized protein (159 aa)
 
          0.945
HMPREF9018_0530
Uncharacterized protein (186 aa)
              0.859
HMPREF9018_1996
Efflux transporter, outer membrane factor lipoprotein, NodT family (459 aa)
   
 
  0.840
HMPREF9018_0230
Putative septum site-determining protein MinC (498 aa)
   
 
  0.840
HMPREF9018_1102
ABC transporter, ATP-binding protein (637 aa)
 
 
0.770
HMPREF9018_0229
Auxiliary transport protein, membrane fusion protein (MFP) family protein (327 aa)
   
 
  0.756
HMPREF9018_1671
ABC transporter, ATP-binding protein (584 aa)
 
 
0.755
HMPREF9018_1670
ABC transporter, ATP-binding protein (579 aa)
 
 
0.755
HMPREF9018_1692
ABC transporter, ATP-binding protein (558 aa)
   
 
0.726
HMPREF9018_0533
Radical SAM domain protein (425 aa)
 
          0.605
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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