STRINGSTRING
HMPREF9018_0538 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0538" - ABC-2 type transporter in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0538ABC-2 type transporter (240 aa)    
Predicted Functional Partners:
HMPREF9018_0539
Uncharacterized protein (177 aa)
              0.859
HMPREF9018_0535
YcaO-like family (419 aa)
 
          0.747
HMPREF9018_0540
Uncharacterized protein (260 aa)
              0.703
HMPREF9018_0537
ABC transporter, ATP-binding protein (290 aa)
 
          0.594
HMPREF9018_0536
SagB-type dehydrogenase domain protein (304 aa)
 
          0.589
HMPREF9018_0541
Uncharacterized protein (721 aa)
              0.541
HMPREF9018_0534
Uncharacterized protein (319 aa)
              0.445
nfeD
Nodulation efficiency protein D (149 aa)
   
          0.443
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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