STRINGSTRING
HMPREF9018_0541 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0541" - Uncharacterized protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0541Uncharacterized protein (721 aa)    
Predicted Functional Partners:
HMPREF9018_0540
Uncharacterized protein (260 aa)
              0.671
HMPREF9018_1555
TonB-linked outer membrane protein, SusC/RagA family (1049 aa)
   
          0.560
HMPREF9018_0539
Uncharacterized protein (177 aa)
              0.541
HMPREF9018_0538
ABC-2 type transporter (240 aa)
              0.541
HMPREF9018_0615
Uncharacterized protein (514 aa)
   
          0.519
HMPREF9018_1361
TonB-dependent receptor (709 aa)
   
          0.516
HMPREF9018_1326
DNA-binding helix-turn-helix protein (67 aa)
   
          0.503
HMPREF9018_1559
Uncharacterized protein (846 aa)
   
          0.496
HMPREF9018_1556
Uncharacterized protein (480 aa)
   
          0.494
HMPREF9018_1560
Uncharacterized protein (845 aa)
   
          0.480
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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