STRINGSTRING
HMPREF9018_0545 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0545" - DNA binding domain, excisionase family in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0545DNA binding domain, excisionase family (100 aa)    
Predicted Functional Partners:
HMPREF9018_0544
DNA binding domain, excisionase family (96 aa)
 
       
0.867
HMPREF9018_1416
Uncharacterized protein (95 aa)
   
          0.773
HMPREF9018_0549
Uncharacterized protein (153 aa)
 
          0.685
HMPREF9018_0546
Uncharacterized protein (50 aa)
              0.635
HMPREF9018_0362
Integrase (301 aa)
   
          0.587
HMPREF9018_0528
Uncharacterized protein (159 aa)
   
          0.479
HMPREF9018_0548
Uncharacterized protein (289 aa)
 
          0.466
HMPREF9018_0547
Virulence-associated protein E (428 aa)
 
          0.460
HMPREF9018_0988
Uncharacterized protein (254 aa)
   
          0.447
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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