STRINGSTRING
HMPREF9018_0547 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0547" - Virulence-associated protein E in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0547Virulence-associated protein E (428 aa)    
Predicted Functional Partners:
HMPREF9018_0548
Uncharacterized protein (289 aa)
 
          0.731
HMPREF9018_1453
Uncharacterized protein (170 aa)
   
          0.592
HMPREF9018_1760
Uncharacterized protein (167 aa)
   
          0.552
HMPREF9018_0544
DNA binding domain, excisionase family (96 aa)
 
          0.520
HMPREF9018_0546
Uncharacterized protein (50 aa)
              0.497
HMPREF9018_1534
Uncharacterized protein (324 aa)
 
          0.478
HMPREF9018_0549
Uncharacterized protein (153 aa)
              0.472
HMPREF9018_0545
DNA binding domain, excisionase family (100 aa)
 
          0.460
HMPREF9018_1484
Uncharacterized protein (328 aa)
   
          0.403
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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