STRINGSTRING
HMPREF9018_0558 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0558" - Phage integrase SAM-like domain protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0558Phage integrase SAM-like domain protein ; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules (292 aa)    
Predicted Functional Partners:
raiA
Ribosomal subunit interface protein (99 aa)
            0.885
rpsU
30S ribosomal protein S21 (63 aa)
              0.651
hisS
Histidyl-tRNA synthetase (454 aa)
     
      0.640
HMPREF9018_1912
Type I restriction modification DNA specificity domain protein (399 aa)
   
   
  0.517
nifJ
Pyruvate-flavodoxin oxidoreductase ; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin (1191 aa)
         
  0.516
polA
DNA-directed DNA polymerase (945 aa)
         
  0.515
HMPREF9018_1411
Site-specific recombinase, phage integrase family (247 aa)
 
 
 
  0.515
priA
ATP-dependent helicase PriA ; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA (765 aa)
 
        0.501
nadD
Nicotinate mononucleotide adenylyltransferase ; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) (189 aa)
       
    0.490
HMPREF9018_2056
Sigma-70, region 4 ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (228 aa)
     
      0.485
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (6%) [HD]