STRINGSTRING
rpoB protein (Prevotella amnii) - STRING interaction network
"rpoB" - Transcriptase subunit beta in Prevotella amnii
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rpoBTranscriptase subunit beta ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1269 aa)    
Predicted Functional Partners:
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1457 aa)
  0.999
rpoA
Transcriptase subunit alpha ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (332 aa)
 
  0.998
HMPREF9018_1471
Sigma-70 region 2 ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (290 aa)
 
 
  0.992
HMPREF9018_0566
Transcription termination/antitermination protein NusG ; Participates in transcription elongation, termination and antitermination (181 aa)
 
  0.987
fusA
Elongation factor G ; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (704 aa)
 
  0.977
HMPREF9018_0815
Translation elongation factor G (718 aa)
   
  0.964
nusA
Transcription termination/antitermination protein NusA ; Participates in both transcription termination and antitermination (421 aa)
 
 
  0.953
HMPREF9018_0425
Helicase C-terminal domain protein (477 aa)
   
  0.948
HMPREF9018_0356
SNF2 family N-terminal domain protein (1090 aa)
   
  0.948
HMPREF9018_0090
Type III restriction enzyme, res subunit (547 aa)
   
  0.948
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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