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rpoC protein (Prevotella amnii) - STRING interaction network
"rpoC" - Transcriptase subunit beta' in Prevotella amnii
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rpoCTranscriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1457 aa)    
Predicted Functional Partners:
rpoB
Transcriptase subunit beta ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1269 aa)
  0.999
rpoA
Transcriptase subunit alpha ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (332 aa)
 
  0.999
HMPREF9018_0566
Transcription termination/antitermination protein NusG ; Participates in transcription elongation, termination and antitermination (181 aa)
 
  0.999
HMPREF9018_1471
Sigma-70 region 2 ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (290 aa)
   
 
  0.991
fusA
Elongation factor G ; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (704 aa)
 
  0.963
HMPREF9018_0425
Helicase C-terminal domain protein (477 aa)
   
  0.947
HMPREF9018_0356
SNF2 family N-terminal domain protein (1090 aa)
   
  0.947
HMPREF9018_0090
Type III restriction enzyme, res subunit (547 aa)
   
  0.947
HMPREF9018_0815
Translation elongation factor G (718 aa)
   
  0.941
rplB
50S ribosomal protein L2 ; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome (275 aa)
   
 
  0.920
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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