STRINGSTRING
HMPREF9018_0612 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0612" - Uncharacterized protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0612Uncharacterized protein (242 aa)    
Predicted Functional Partners:
HMPREF9018_0611
Uncharacterized protein (391 aa)
              0.805
HMPREF9018_0614
Uncharacterized protein (317 aa)
              0.764
HMPREF9018_0613
Uncharacterized protein (341 aa)
              0.764
HMPREF9018_0610
Carbohydrate binding domain protein (364 aa)
              0.706
HMPREF9018_0609
Uncharacterized protein (303 aa)
              0.689
HMPREF9018_0615
Uncharacterized protein (514 aa)
              0.662
HMPREF9018_0616
TonB-linked outer membrane protein, SusC/RagA family (1129 aa)
              0.659
HMPREF9018_0617
TonB-dependent receptor plug domain protein (751 aa)
              0.552
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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