STRINGSTRING
HMPREF9018_0631 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0631" - Uncharacterized protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0631Uncharacterized protein (139 aa)    
Predicted Functional Partners:
HMPREF9018_0470
Conjugative transposon protein TraA (267 aa)
   
          0.734
HMPREF9018_0632
Uncharacterized protein (168 aa)
 
          0.723
HMPREF9018_0966
TonB-dependent receptor (780 aa)
   
          0.695
HMPREF9018_0469
Uncharacterized protein (175 aa)
   
          0.667
HMPREF9018_1755
Uncharacterized protein (364 aa)
   
          0.653
HMPREF9018_0856
Uncharacterized protein (341 aa)
   
          0.644
HMPREF9018_1164
Uncharacterized protein (467 aa)
   
          0.638
HMPREF9018_0633
DNA binding domain, excisionase family (104 aa)
 
          0.597
HMPREF9018_1775
Conjugative transposon TraM protein (422 aa)
   
          0.560
HMPREF9018_1151
Site-specific recombinase, phage integrase family (419 aa)
   
          0.552
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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