STRINGSTRING
HMPREF9018_0703 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0703" - DNA-binding helix-turn-helix protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0703DNA-binding helix-turn-helix protein (148 aa)    
Predicted Functional Partners:
HMPREF9018_1876
Uncharacterized protein (148 aa)
   
          0.696
HMPREF9018_1900
Uncharacterized protein (136 aa)
   
          0.683
HMPREF9018_0273
Uncharacterized protein (78 aa)
   
          0.679
HMPREF9018_1940
Uncharacterized protein (586 aa)
   
          0.642
HMPREF9018_1758
Alpha-2-macroglobulin family protein (1850 aa)
   
          0.576
HMPREF9018_0288
GSCFA family protein (269 aa)
   
          0.519
HMPREF9018_0287
Uncharacterized protein (840 aa)
   
          0.515
HMPREF9018_0033
Uncharacterized protein (507 aa)
   
          0.427
HMPREF9018_0667
Uncharacterized protein (179 aa)
   
          0.421
HMPREF9018_1209
Uncharacterized protein (860 aa)
   
          0.418
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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