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STRINGSTRING
EFN90853.1 protein (Prevotella amnii) - STRING interaction network
"EFN90853.1" - DNA-binding helix-turn-helix protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
EFN90853.1DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381 (148 aa)    
Predicted Functional Partners:
ribD
Riboflavin biosynthesis protein RibD; Identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326 (313 aa)
           
  0.635
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (945 aa)
         
  0.629
ribB
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family (402 aa)
           
  0.598
EFN92139.1
Sporulation and cell division repeat protein; Identified by match to protein family HMM PF05036 (323 aa)
   
          0.539
EFN91962.1
Alpha-2-macroglobulin family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01835 (1850 aa)
   
          0.431
EFN92034.1
Identified by match to protein family HMM PF03372 (349 aa)
   
        0.419
EFN90832.1
annotation not available (264 aa)
   
          0.416
EFN90300.1
annotation not available (219 aa)
   
          0.411
EFN91931.1
annotation not available (382 aa)
   
     
  0.410
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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