STRINGSTRING
ahpC protein (Prevotella amnii) - STRING interaction network
"ahpC" - Peroxiredoxin in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ahpCPeroxiredoxin (188 aa)    
Predicted Functional Partners:
ahpF
Alkyl hydroperoxide reductase, F subunit (520 aa)
 
 
  0.988
trxA
Thioredoxin (104 aa)
   
  0.975
HMPREF9018_1992
Antioxidant, AhpC/TSA family (278 aa)
   
  0.967
HMPREF9018_1691
Antioxidant, AhpC/TSA family (326 aa)
   
  0.967
HMPREF9018_0758
Antioxidant, AhpC/TSA family (384 aa)
   
  0.967
trxB
Thioredoxin reductase (313 aa)
   
 
  0.967
HMPREF9018_1694
DJ-1 family protein (191 aa)
   
 
  0.819
HMPREF9018_0711
LysR substrate binding domain protein (312 aa)
         
  0.774
trpC
Indole-3-glycerol phosphate synthase (266 aa)
   
 
  0.768
HMPREF9018_0513
Antioxidant, AhpC/TSA family (151 aa)
   
 
0.759
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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