STRINGSTRING
HMPREF9018_0718 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0718" - Copper-exporting ATPase in Prevotella amnii
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0718Copper-exporting ATPase (639 aa)    
Predicted Functional Partners:
HMPREF9018_0854
Uncharacterized protein (164 aa)
     
  0.945
HMPREF9018_0674
Calcium-translocating P-type ATPase, PMCA-type (904 aa)
 
0.925
mgtA
Magnesium-importing ATPase (880 aa)
   
0.916
HMPREF9018_0719
Heavy metal-associated domain protein (71 aa)
              0.775
HMPREF9018_1037
Uncharacterized protein (394 aa)
   
      0.757
polA
DNA-directed DNA polymerase (945 aa)
   
   
  0.628
HMPREF9018_0720
MATE efflux family protein (454 aa)
   
        0.617
tig
Trigger factor (455 aa)
   
 
  0.600
rplB
50S ribosomal protein L2 ; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome (275 aa)
     
      0.583
rplO
50S ribosomal protein L15 ; Binds to the 23S rRNA (148 aa)
       
      0.573
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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