STRINGSTRING
nfeD protein (Prevotella amnii) - STRING interaction network
"nfeD" - Nodulation efficiency protein D in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfeDNodulation efficiency protein D (149 aa)    
Predicted Functional Partners:
HMPREF9018_0722
SPFH/Band 7/PHB domain protein (317 aa)
 
   
  0.944
HMPREF9018_0721
UDP-N-acetylglucosamine 2-epimerase (371 aa)
              0.671
HMPREF9018_0720
MATE efflux family protein (454 aa)
              0.539
HMPREF9018_0538
ABC-2 type transporter (240 aa)
   
          0.443
HMPREF9018_0719
Heavy metal-associated domain protein (71 aa)
              0.424
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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