STRINGSTRING
truA protein (Prevotella amnii) - STRING interaction network
"truA" - tRNA-uridine isomerase I in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
truAtRNA-uridine isomerase I ; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (257 aa)    
Predicted Functional Partners:
truB
tRNA-uridine isomerase ; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (233 aa)
 
  0.898
HMPREF9018_0766
Putative membrane protein (312 aa)
   
        0.864
HMPREF9018_0768
ComEC/Rec2-like protein (523 aa)
              0.811
HMPREF9018_1651
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (361 aa)
 
   
  0.726
ksgA
S-adenosylmethionine-6-N’, N’-adenosyl(rRNA) dimethyltransferase ; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (267 aa)
 
   
  0.723
xseB
Exodeoxyribonuclease VII small subunit ; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides (62 aa)
 
          0.718
HMPREF9018_1090
Kinase, PfkB family (310 aa)
       
    0.715
guaA
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (514 aa)
   
   
  0.702
HMPREF9018_0978
RNA pseudouridine synthase (235 aa)
 
   
  0.698
rpsC
30S ribosomal protein S3 ; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation (245 aa)
 
 
  0.692
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (6%) [HD]