STRINGSTRING
HMPREF9018_0771 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0771" - MATE efflux family protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0771MATE efflux family protein (456 aa)    
Predicted Functional Partners:
HMPREF9018_0772
Uncharacterized protein (208 aa)
              0.874
rfbB
dTDP-glucose 4,6-dehydratase (384 aa)
   
        0.657
HMPREF9018_0770
Exodeoxyribonuclease 7 large subunit ; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides (439 aa)
   
        0.612
xseB
Exodeoxyribonuclease VII small subunit ; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides (62 aa)
              0.591
HMPREF9018_0989
PhoH family protein (321 aa)
     
      0.589
HMPREF9018_1603
Acyltransferase (1194 aa)
     
    0.559
HMPREF9018_0690
Acyltransferase (255 aa)
     
    0.559
HMPREF9018_0577
Acyltransferase (181 aa)
     
    0.559
HMPREF9018_0768
ComEC/Rec2-like protein (523 aa)
   
        0.512
HMPREF9018_0766
Putative membrane protein (312 aa)
   
      0.508
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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