STRINGSTRING
nspC protein (Prevotella amnii) - STRING interaction network
"nspC" - Carboxynorspermidine decarboxylase in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nspCCarboxynorspermidine decarboxylase (394 aa)    
Predicted Functional Partners:
LYS1
Saccharopine dehydrogenase (419 aa)
 
 
  0.965
HMPREF9018_1576
Aspartokinase (443 aa)
   
  0.909
HMPREF9018_0807
Uncharacterized protein (195 aa)
   
  0.867
alr
Alanine racemase (849 aa)
       
  0.852
ilvE
Branched-chain-amino-acid transaminase (338 aa)
   
  0.850
asd
Aspartate-beta-semialdehyde dehydrogenase ; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate (338 aa)
   
 
  0.843
HMPREF9018_1899
Aminotransferase, class I/II (398 aa)
   
 
  0.830
HMPREF9018_0292
Aminotransferase, class I/II (398 aa)
   
 
  0.830
HMPREF9018_1886
ATP-grasp domain protein (333 aa)
   
 
  0.804
carB
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) (1074 aa)
   
 
  0.804
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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