STRINGSTRING
HMPREF9018_0828 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0828" - Tetratricopeptide repeat protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0828Tetratricopeptide repeat protein (228 aa)    
Predicted Functional Partners:
HMPREF9018_1353
Uncharacterized protein (686 aa)
   
          0.777
HMPREF9018_1385
Zinc-dependent metalloproteinase lipoprotein, BF0631 family (357 aa)
   
          0.752
HMPREF9018_1720
Uncharacterized protein (416 aa)
   
          0.740
HMPREF9018_0668
Uncharacterized protein (170 aa)
   
          0.692
HMPREF9018_0162
Uncharacterized protein (178 aa)
   
          0.683
HMPREF9018_0226
Uncharacterized protein (273 aa)
   
          0.617
HMPREF9018_0830
Uncharacterized protein (408 aa)
 
          0.605
nadE
NAD+ synthase (655 aa)
              0.592
HMPREF9018_0391
Phosphatidylinositol-specific phospholipase C, X domain protein (667 aa)
   
          0.589
HMPREF9018_0072
SusD family protein (450 aa)
   
          0.573
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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