STRINGSTRING
xth protein (Prevotella amnii) - STRING interaction network
"xth" - Exodeoxyribonuclease III in Prevotella amnii
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xthExodeoxyribonuclease III (249 aa)    
Predicted Functional Partners:
nth
DNA-(apurinic or apyrimidinic site) lyase ; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination, leaving a 3’-terminal unsaturated sugar and a product with a terminal 5’-phosphate (216 aa)
 
  0.989
dnaN
DNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (374 aa)
   
  0.946
polA
DNA-directed DNA polymerase (945 aa)
     
  0.919
HMPREF9018_0877
Uncharacterized protein (232 aa)
              0.859
ung
Uracil-DNA glycosylase ; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine (221 aa)
   
  0.827
folE
GTP cyclohydrolase I (195 aa)
              0.823
HMPREF9018_0875
Uncharacterized protein (250 aa)
              0.787
HMPREF9018_1953
Uncharacterized protein (381 aa)
   
    0.760
HMPREF9018_1211
Uncharacterized protein (195 aa)
   
 
    0.715
HMPREF9018_0879
Sporulation and cell division repeat protein (244 aa)
              0.667
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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