STRINGSTRING
gldE protein (Prevotella amnii) - STRING interaction network
"gldE" - Gliding motility-associated protein GldE in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gldEGliding motility-associated protein GldE (440 aa)    
Predicted Functional Partners:
HMPREF9018_0912
Single-stranded DNA-binding protein (137 aa)
              0.909
HMPREF9018_0914
Uncharacterized protein (171 aa)
              0.868
guaA
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (514 aa)
   
 
    0.747
guaB
Inosine-5’-monophosphate dehydrogenase (494 aa)
   
 
    0.707
HMPREF9018_1622
Oxidoreductase, short chain dehydrogenase/reductase family protein (246 aa)
   
 
    0.699
fabG
3-oxoacyl-[acyl-carrier-protein] reductase (250 aa)
   
 
    0.699
rpmA
50S ribosomal protein L27 (96 aa)
   
      0.644
HMPREF9018_1102
ABC transporter, ATP-binding protein (637 aa)
 
   
  0.633
HMPREF9018_0916
Uncharacterized protein (305 aa)
              0.598
HMPREF9018_0915
Glycosyltransferase, group 2 family protein (495 aa)
              0.598
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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