STRINGSTRING
HMPREF9018_0918 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0918" - Uncharacterized protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0918Uncharacterized protein (448 aa)    
Predicted Functional Partners:
HMPREF9018_0915
Glycosyltransferase, group 2 family protein (495 aa)
 
          0.915
HMPREF9018_0917
SpoIID/LytB domain protein (442 aa)
 
          0.910
HMPREF9018_0916
Uncharacterized protein (305 aa)
 
          0.872
HMPREF9018_0919
Peptidase, M48 family (294 aa)
              0.612
HMPREF9018_0914
Uncharacterized protein (171 aa)
              0.564
gldE
Gliding motility-associated protein GldE (440 aa)
              0.564
HMPREF9018_0912
Single-stranded DNA-binding protein (137 aa)
              0.564
HMPREF9018_0879
Sporulation and cell division repeat protein (244 aa)
   
          0.466
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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