• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
EFN91247.1 protein (Prevotella amnii) - STRING interaction network
"EFN91247.1" - DNA-binding helix-turn-helix protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFN91247.1DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381 (121 aa)    
Predicted Functional Partners:
EFN91193.1
annotation not available (587 aa)
   
          0.757
EFN91205.1
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication (1319 aa)
   
          0.753
EFN91204.1
Peptidase, S49 (Protease IV) family protein; Identified by match to protein family HMM PF01343 (274 aa)
   
          0.653
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (945 aa)
         
  0.631
EFN91215.1
annotation not available (1335 aa)
 
          0.618
EFN91192.1
Methyltransferase; Identified by match to protein family HMM PF01555; Belongs to the N(4)/N(6)-methyltransferase family (441 aa)
 
          0.597
EFN91210.1
Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; Belongs to the ’phage’ integrase family (405 aa)
 
          0.594
EFN91237.1
annotation not available (849 aa)
   
          0.568
EFN91188.1
Cytosine-specific methyltransferase; Identified by match to protein family HMM PF00145 (492 aa)
   
          0.535
EFN91203.1
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; Identified by match to protein family HMM PF01832 (172 aa)
   
          0.525
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (7%) [HD]