STRINGSTRING
HMPREF9018_0920 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0920" - DNA-binding helix-turn-helix protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0920DNA-binding helix-turn-helix protein (121 aa)    
Predicted Functional Partners:
HMPREF9018_0922
DNA primase ; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication (1319 aa)
   
          0.732
HMPREF9018_0632
Uncharacterized protein (168 aa)
   
          0.586
HMPREF9018_1797
Uncharacterized protein (168 aa)
   
          0.542
HMPREF9018_0921
Uncharacterized protein (39 aa)
              0.499
HMPREF9018_1876
Uncharacterized protein (148 aa)
   
          0.434
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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