STRINGSTRING
HMPREF9018_0943 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0943" - Uncharacterized protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0943Uncharacterized protein (179 aa)    
Predicted Functional Partners:
HMPREF9018_0944
Uncharacterized protein (146 aa)
              0.877
HMPREF9018_1919
Uncharacterized protein (467 aa)
   
          0.704
HMPREF9018_1792
Radical SAM domain protein (490 aa)
   
          0.621
HMPREF9018_1487
Uncharacterized protein (235 aa)
   
          0.606
HMPREF9018_1918
TonB-linked outer membrane protein, SusC/RagA family (930 aa)
   
          0.521
HMPREF9018_1486
Uncharacterized protein (334 aa)
   
          0.505
HMPREF9018_0024
Uncharacterized protein (502 aa)
   
          0.500
HMPREF9018_1988
Uncharacterized protein (150 aa)
   
          0.468
HMPREF9018_1770
Uncharacterized protein (299 aa)
   
          0.463
HMPREF9018_1794
RHS repeat-associated core domain protein (297 aa)
   
          0.458
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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