STRINGSTRING
HMPREF9018_0966 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0966" - TonB-dependent receptor in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0966TonB-dependent receptor (780 aa)    
Predicted Functional Partners:
HMPREF9018_0642
Uncharacterized protein (375 aa)
   
          0.755
HMPREF9018_0380
SusD family protein (534 aa)
   
          0.730
HMPREF9018_0377
Uncharacterized protein (315 aa)
   
          0.721
HMPREF9018_0381
TonB-linked outer membrane protein, SusC/RagA family (999 aa)
   
          0.718
HMPREF9018_1796
Uncharacterized protein (139 aa)
   
          0.710
HMPREF9018_0631
Uncharacterized protein (139 aa)
   
          0.695
HMPREF9018_0378
Peptidase, S8/S53 family (951 aa)
   
          0.661
HMPREF9018_1286
Toxin-antitoxin system, toxin component, RelE family (113 aa)
   
          0.615
HMPREF9018_0967
Uncharacterized protein (265 aa)
 
          0.595
HMPREF9018_1155
Abi-like protein (308 aa)
   
          0.552
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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