STRINGSTRING
HMPREF9018_0997 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_0997" - Uncharacterized protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_0997Uncharacterized protein (96 aa)    
Predicted Functional Partners:
recF
DNA replication and repair protein RecF ; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP (368 aa)
              0.859
HMPREF9018_1903
Uncharacterized protein (219 aa)
   
          0.763
HMPREF9018_0376
Uncharacterized protein (664 aa)
   
          0.714
HMPREF9018_0209
Uncharacterized protein (170 aa)
   
          0.643
HMPREF9018_1075
Uncharacterized protein (205 aa)
   
          0.630
HMPREF9018_0784
Uncharacterized protein (228 aa)
   
          0.629
secG
Preprotein translocase, SecG subunit (122 aa)
   
          0.622
HMPREF9018_2054
Tetratricopeptide repeat protein (397 aa)
   
          0.620
HMPREF9018_1578
FHA domain protein (179 aa)
   
          0.610
HMPREF9018_0999
Tetratricopeptide repeat protein (224 aa)
              0.608
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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