STRINGSTRING
HMPREF9018_1024 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1024" - Putative membrane protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1024Putative membrane protein (308 aa)    
Predicted Functional Partners:
HMPREF9018_1692
ABC transporter, ATP-binding protein (558 aa)
   
      0.750
HMPREF9018_1671
ABC transporter, ATP-binding protein (584 aa)
   
      0.750
HMPREF9018_1670
ABC transporter, ATP-binding protein (579 aa)
   
      0.750
HMPREF9018_1102
ABC transporter, ATP-binding protein (637 aa)
   
      0.750
HMPREF9018_1025
Alpha-amylase (646 aa)
 
        0.607
cdsA
Phosphatidate cytidylyltransferase (288 aa)
   
      0.597
HMPREF9018_1023
Pyridoxal kinase (272 aa)
              0.514
HMPREF9018_1022
TrkA C-terminal domain protein (553 aa)
              0.511
HMPREF9018_1176
Transporter, small conductance mechanosensitive ion channel MscS family protein (792 aa)
 
 
      0.479
secY
Protein translocase subunit SecY ; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently (444 aa)
   
      0.455
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (8%) [HD]