STRINGSTRING
HMPREF9018_1025 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1025" - Alpha-amylase in Prevotella amnii
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1025Alpha-amylase (646 aa)    
Predicted Functional Partners:
glgP
Alpha-glucan phosphorylase (852 aa)
   
  0.991
HMPREF9018_1848
Putative 4-alpha-glucanotransferase (897 aa)
 
 
  0.986
HMPREF9018_0593
1,4-alpha-glucan branching enzyme (689 aa)
 
 
  0.906
pulA
Pullulanase, type I (637 aa)
 
  0.878
HMPREF9018_0886
Starch synthase catalytic domain protein (269 aa)
   
  0.875
rplF
50S ribosomal protein L6 ; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center (188 aa)
 
 
      0.836
HMPREF9018_1846
Alpha amylase, catalytic domain protein (609 aa)
 
   
    0.835
HMPREF9018_1088
Uncharacterized protein (706 aa)
 
   
    0.827
HMPREF9018_1934
HAD hydrolase, family IA, variant 3 (221 aa)
   
 
  0.817
tig
Trigger factor (455 aa)
   
      0.813
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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