STRINGSTRING
HMPREF9018_1027 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1027" - Uncharacterized protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1027Uncharacterized protein (382 aa)    
Predicted Functional Partners:
HMPREF9018_1028
DNA topoisomerase (ATP-hydrolyzing) (646 aa)
              0.755
HMPREF9018_1026
Uncharacterized protein (37 aa)
              0.615
HMPREF9018_0273
Uncharacterized protein (78 aa)
   
          0.610
HMPREF9018_1336
Putative 8-amino-7-oxononanoate synthase (396 aa)
 
          0.587
HMPREF9018_1029
Peptidase, S41 family (525 aa)
              0.486
HMPREF9018_1071
NAD dependent epimerase/dehydratase family protein (332 aa)
 
          0.482
HMPREF9018_0482
Aminotransferase, class I/II (410 aa)
 
          0.464
HMPREF9018_0287
Uncharacterized protein (840 aa)
 
          0.456
HMPREF9018_0263
Uncharacterized protein (409 aa)
   
          0.412
HMPREF9018_1723
Uncharacterized protein (215 aa)
   
          0.404
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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