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HMPREF9018_1030 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1030" - ABC transporter, ATP-binding protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1030ABC transporter, ATP-binding protein (234 aa)    
Predicted Functional Partners:
HMPREF9018_0228
Uncharacterized protein (390 aa)
   
  0.875
HMPREF9018_0227
ABC-2 type transporter (396 aa)
   
  0.875
HMPREF9018_1102
ABC transporter, ATP-binding protein (637 aa)
0.788
HMPREF9018_1671
ABC transporter, ATP-binding protein (584 aa)
 
  0.781
HMPREF9018_1670
ABC transporter, ATP-binding protein (579 aa)
 
  0.781
HMPREF9018_1692
ABC transporter, ATP-binding protein (558 aa)
 
0.767
HMPREF9018_1031
Uncharacterized protein (430 aa)
              0.748
lolD
Lipoprotein-releasing system ATP-binding protein LolD ; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner (228 aa)
   
0.737
HMPREF9018_1961
Putative 3-oxoacyl-[acyl-carrier-protein] reductase (274 aa)
 
 
 
  0.655
HMPREF9018_0202
Iron chelate uptake ABC transporter, FeCT family, permease protein (338 aa)
       
    0.624
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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