STRINGSTRING
HMPREF9018_1036 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1036" - Uncharacterized protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1036Uncharacterized protein (422 aa)    
Predicted Functional Partners:
HMPREF9018_1038
Uncharacterized protein (63 aa)
              0.656
HMPREF9018_1723
Uncharacterized protein (215 aa)
   
          0.621
HMPREF9018_1410
Uncharacterized protein (1480 aa)
 
          0.442
HMPREF9018_2044
Ribosomal RNA small subunit methyltransferase E ; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit (265 aa)
 
          0.419
HMPREF9018_1940
Uncharacterized protein (586 aa)
   
          0.416
HMPREF9018_1204
Uncharacterized protein (130 aa)
   
          0.413
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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