STRINGSTRING
HMPREF9018_1068 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1068" - GH3 auxin-responsive promoter in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1068GH3 auxin-responsive promoter (503 aa)    
Predicted Functional Partners:
HMPREF9018_1067
Uncharacterized protein (687 aa)
              0.766
HMPREF9018_1066
Heptosyltransferase (348 aa)
              0.752
HMPREF9018_1936
Uncharacterized protein (333 aa)
   
          0.750
HMPREF9018_0283
Uncharacterized protein (113 aa)
   
          0.725
HMPREF9018_0818
Uncharacterized protein (128 aa)
   
          0.655
HMPREF9018_0194
Uncharacterized protein (199 aa)
   
          0.606
HMPREF9018_1365
Permease, YjgP/YjgQ family (633 aa)
   
          0.500
HMPREF9018_1978
Type I restriction enzyme HsdR protein N-terminal domain protein (148 aa)
   
          0.455
HMPREF9018_1339
Uncharacterized protein (127 aa)
   
          0.452
HMPREF9018_0886
Starch synthase catalytic domain protein (269 aa)
   
          0.452
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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