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HMPREF9018_1073 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1073" - TonB-dependent receptor plug domain protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1073TonB-dependent receptor plug domain protein (823 aa)    
Predicted Functional Partners:
HMPREF9018_1917
Putative DNA-binding protein (142 aa)
   
          0.770
HMPREF9018_1657
TonB-dependent receptor plug domain protein (686 aa)
   
          0.696
HMPREF9018_0892
Tetratricopeptide repeat domain protein (417 aa)
   
          0.682
HMPREF9018_1845
Uncharacterized protein (175 aa)
   
          0.650
HMPREF9018_0486
Uncharacterized protein (616 aa)
 
          0.646
HMPREF9018_1837
ABC transporter, ATP-binding protein (273 aa)
 
          0.623
HMPREF9018_1988
Uncharacterized protein (150 aa)
   
          0.619
HMPREF9018_0296
TonB-dependent receptor (294 aa)
   
          0.618
HMPREF9018_0622
TonB-dependent receptor (261 aa)
   
          0.615
HMPREF9018_0252
TonB-dependent receptor plug domain protein (799 aa)
   
          0.614
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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