STRINGSTRING
HMPREF9018_1080 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1080" - DegT/DnrJ/EryC1/StrS aminotransferase family protein in Prevotella amnii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1080DegT/DnrJ/EryC1/StrS aminotransferase family protein (448 aa)    
Predicted Functional Partners:
HMPREF9018_1169
Polysaccharide biosynthesis protein (649 aa)
 
 
  0.931
gmd
GDP-D-mannose dehydratase ; Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose (363 aa)
       
  0.859
fcl
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase ; Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction (403 aa)
   
 
  0.854
rfbB
dTDP-glucose 4,6-dehydratase (384 aa)
   
 
  0.852
HMPREF9018_0705
Oxidoreductase, NAD-binding domain protein (328 aa)
   
 
  0.839
HMPREF9018_1643
NAD dependent epimerase/dehydratase family protein (319 aa)
   
 
  0.834
HMPREF9018_1071
NAD dependent epimerase/dehydratase family protein (332 aa)
   
 
  0.834
HMPREF9018_0515
NAD dependent epimerase/dehydratase family protein (350 aa)
   
 
  0.834
fmt
Methionyl-tRNA formyltransferase ; Modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by- (I) promoting its recognition by IF2 and (II) impairing its binding to EFTu-GTP (340 aa)
   
 
  0.832
HMPREF9018_1963
Acetyltransferase, GNAT family (181 aa)
   
 
  0.824
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
Server load: low (8%) [HD]