STRINGSTRING
HMPREF9018_1108 protein (Prevotella amnii) - STRING interaction network
"HMPREF9018_1108" - WbqC-like protein in Prevotella amnii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMPREF9018_1108WbqC-like protein (204 aa)    
Predicted Functional Partners:
lepB
Signal peptidase I (510 aa)
 
          0.895
HMPREF9018_1111
Uncharacterized protein (432 aa)
 
          0.799
HMPREF9018_0258
Uncharacterized protein (1110 aa)
   
          0.766
HMPREF9018_0882
Uncharacterized protein (182 aa)
   
          0.754
yfiO
Outer membrane assembly lipoprotein YfiO (309 aa)
   
          0.754
HMPREF9018_0283
Uncharacterized protein (113 aa)
   
          0.724
dapB
Dihydrodipicolinate reductase (251 aa)
              0.712
HMPREF9018_0194
Uncharacterized protein (199 aa)
   
          0.710
HMPREF9018_0693
Uncharacterized protein (264 aa)
 
          0.692
HMPREF9018_0389
Endonuclease/exonuclease/phosphatase family protein (365 aa)
 
          0.604
Your Current Organism:
Prevotella amnii
NCBI taxonomy Id: 679191
Other names: P. amnii, P. amnii CRIS 21A-A, Prevotella amnii, Prevotella amnii CRIS 21A-A, Prevotella amnii Lawson et al. 2008, Prevotella amnii str. CRIS 21A-A, Prevotella amnii strain CRIS 21A-A
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